PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10026051m
Common NameCICLE_v10026051mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 332aa    MW: 37150.8 Da    PI: 5.9525
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10026051mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.43.3e-07127148223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       C +Cgk F+r  nL+ H+r H
  Ciclev10026051m 127 FCDICGKGFKRDANLRMHMRAH 148
                      6*******************99 PP

2zf-C2H212.10.0006211234123
                      EEETTTT.EEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                      y+C +C+ ksFs  s+L++H +++
  Ciclev10026051m 211 YSCDKCHkKSFSVVSDLRSHYKNC 234
                      99*******************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.02E-6123149No hitNo description
PROSITE profilePS5015712.217126153IPR007087Zinc finger, C2H2
SMARTSM003550.0017126148IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280128148IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-6128151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035534173206IPR015880Zinc finger, C2H2-like
SMARTSM0035566211232IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MSNPDESRPI RPEYPVQYTD PRIPLTNLSA VRTRMESLQQ FLLESINSNA LISQHQMNMV  60
SSEIASAIHQ VIVNGSALLA CSPQQPTLQQ LPPDPKNPET GSEHDIESDC EIVEIDAVEL  120
LAEHIHFCDI CGKGFKRDAN LRMHMRAHGD EFKTPQALAK PEKGSVSGRK TRFSCPYDGC  180
NRNKKHKKFR ALKSVICVKN HFKRSHCPKM YSCDKCHKKS FSVVSDLRSH YKNCGESRWK  240
CSCGTSFSRK DKLFGHVALF EGHMPEVEVD EKMKHHDQDV VVVGDDDDDD EMVDDIDDDG  300
LSSFEGLLGL DGFGSFDDFC LQDVLGDGGF S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006428216.10.0hypothetical protein CICLE_v10026051mg
RefseqXP_006464195.10.0PREDICTED: zinc finger protein STOP1 homolog
SwissprotQ9C8N52e-76STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLV4SW990.0V4SW99_9R
STRINGPOPTR_0007s05340.11e-139(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16077813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.36e-77C2H2 family protein